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R

rChild(int) - Method in class edu.claflin.finder.algo.jungutils.MapBinaryHeap

readManifest(File) - Static method in class edu.claflin.finder.io.ManifestParser

Reads the manifest file.

rebuildHeap(int) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

Rebuild heap j with the tree j

remove() - Method in class edu.claflin.finder.algo.jungutils.MapBinaryHeap

remove() - Method in class edu.claflin.finder.algo.jungutils.Pair.PairIterator

remove(Object) - Method in class edu.claflin.finder.algo.jungutils.MapBinaryHeap

remove(Object) - Method in class edu.claflin.finder.algo.jungutils.Pair

remove(T) - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

remove(T, TreeNode<T>) - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

remove_node(HeapNodeWT, PriorityQueue<HeapNodeWT>) - Method in class edu.claflin.finder.algo.clustering.Walktrap

Remove a HeapNode from the Queue.

removeAll(Collection<?>) - Method in class edu.claflin.finder.algo.jungutils.MapBinaryHeap

removeAll(Collection<?>) - Method in class edu.claflin.finder.algo.jungutils.Pair

removeBoolean(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Removes a boolean from the booleanList.

removeCondition(Condition) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Removes a Condition from the conditionsList.

removeCondition(Condition) - Method in class edu.claflin.finder.logic.ConditionedGraph

Removes a condition from the graph.

removeDouble(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Removes a double from the doubleList.

removeEdge(E) - Method in interface edu.claflin.finder.algo.jungutils.Hypergraph

Removes edge from this graph.

removeEdge(E) - Method in class edu.claflin.finder.algo.jungutils.SparseGraph

removeEdge(E) - Method in class edu.claflin.finder.algo.jungutils.UndirectedSparseGraph

removeEdgesBetweenAllNodesInList(ArrayList<Node>) - Method in class edu.claflin.finder.logic.Graph

Removes edges in between all possible pair combinations of nodes in a list if both nodes involved are present in the graph.

removeEdgesInvolving(Node) - Method in class edu.claflin.finder.logic.Graph

Remove all the edges in which the given Node participates.

removeEnum(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Removes an enum from the enumList.

removeFromTree(int, int) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

removeInteger(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Removes an integer from the integerList.

removeNode(Node) - Method in class edu.claflin.finder.logic.Graph

Removes a node from the set.

removeObject(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Removes an object from the enumList.

removePaths(Graph, Node, Node) - Method in class edu.claflin.finder.algo.ShortestPath

Private class for removing visited paths that not reach the destination node.

removePropertyChangeListener(PropertyChangeListener) - Method in class edu.claflin.finder.algo.Algorithm

Removes a PropertyChangeListener.

removeVertex(V) - Method in interface edu.claflin.finder.algo.jungutils.Hypergraph

Removes vertex from this graph.

removeVertex(V) - Method in class edu.claflin.finder.algo.jungutils.SparseGraph

removeVertex(V) - Method in class edu.claflin.finder.algo.jungutils.UndirectedSparseGraph

reorder(Graph, Graph) - Method in class edu.claflin.finder.algo.Algorithm

Deprecated.

No replacement. There is no longer a need to reorder graphs to test equality.

replaceAll(String) - Method in class edu.claflin.finder.algo.jungutils.CommonMatcher

replaceAll(String) - Method in class edu.claflin.finder.algo.jungutils.JdkPattern.JdkMatcher

reportProblem(String, String) - Method in class edu.claflin.finder.log.LogUtil

Used to report problems with the logging engine to the terminal.

results - Variable in class edu.claflin.finder.logic.cygrouper.CytogrouperMain

retainAll(Collection<?>) - Method in class edu.claflin.finder.algo.jungutils.MapBinaryHeap

retainAll(Collection<?>) - Method in class edu.claflin.finder.algo.jungutils.Pair

right - Variable in class edu.claflin.finder.logic.communities.struct.TreeNode

root - Variable in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

rotateLeft(TreeNode<T>, TreeNode<T>, TreeNode<T>) - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

rotateRight(TreeNode<T>, TreeNode<T>, TreeNode<T>) - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

rows - Variable in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

rows() - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

get the rows of the matrix

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